nf-core_modules/modules/last/dotplot/meta.yml

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name: last_dotplot
description: Makes a dotplot (Oxford Grid) of pair-wise sequence alignments
keywords:
- LAST
- plot
- pair
- alignment
- MAF
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-dotplot.rst
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- maf:
type: file
description: Multiple Aligment Format (MAF) file, compressed with gzip
pattern: "*.{maf.gz}"
- format:
type: value
description: Output format (PNG or GIF).
output:
- png:
type: file
description: Pairwise alignment dot plot image, in PNG format.
pattern: "*.png"
- gif:
type: file
description: Pairwise alignment dot plot image, in GIF format.
pattern: "*.gif"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@charles-plessy"