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33 lines
1 KiB
YAML
33 lines
1 KiB
YAML
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name: FastQ Screen
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description: Run FastQ Screen on sequenced reads
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keywords:
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- Quality Control
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- Species Screen
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- Contamination
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tools:
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- fastqc:
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description: |
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FastQC gives general quality metrics about your reads.
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It provides information about the quality score distribution
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across your reads, the per base sequence content (%A/C/G/T).
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You get information about adapter contamination and other
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overrepresented sequences.
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homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
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documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
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input:
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-
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- sample_id:
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type: string
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description: Sample identifier
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- reads:
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type: file
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description: Input FastQ file
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output:
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-
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- report:
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type: file
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description: FastQC report
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pattern: *_fastqc.{zip,html}
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authors:
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- @felix
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