2020-03-06 10:35:02 -05:00
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name: tcoffee
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2020-03-05 11:17:14 -05:00
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on:
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2020-07-16 11:11:34 -04:00
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push:
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2020-07-16 11:14:57 -04:00
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paths:
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- software/tcoffee/**
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- .github/workflows/tcoffee.yml
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- tests
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2020-03-05 11:17:14 -05:00
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pull_request:
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2020-07-16 11:14:57 -04:00
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paths:
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- software/tcoffee/**
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- .github/workflows/tcoffee.yml
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- tests
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2020-03-05 11:17:14 -05:00
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jobs:
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run_ci_test:
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runs-on: ubuntu-latest
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2020-07-11 11:14:14 -04:00
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env:
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NXF_ANSI_LOG: false
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2020-03-05 11:17:14 -05:00
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steps:
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2020-03-05 11:48:10 -05:00
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- uses: actions/checkout@v2
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2020-03-05 11:17:14 -05:00
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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# Test the module
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2020-03-06 06:47:55 -05:00
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- run: |
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2020-07-11 08:36:12 -04:00
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cd software/tcoffee/test/
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2020-07-11 11:14:14 -04:00
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nextflow run .
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