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18 lines
535 B
Text
18 lines
535 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { AMRFINDERPLUS_UPDATE } from '../../../../modules/amrfinderplus/update/main.nf'
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include { AMRFINDERPLUS_RUN } from '../../../../modules/amrfinderplus/run/main.nf'
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workflow test_amrfinderplus_run {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)
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]
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AMRFINDERPLUS_UPDATE ( )
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AMRFINDERPLUS_RUN ( input, AMRFINDERPLUS_UPDATE.out.db )
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}
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