nf-core_modules/tests/modules/sratools/ncbisettings/test.yml

- name: "sratools ncbisettings test_sratools_ncbisettings_with_good_existing"
  command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_good_existing -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow_mount.config
  tags:
    - "sratools"
    - "sratools/ncbisettings"
  files:
    - path: "output/sratools/user-settings.mkfg"
      md5sum: 955e27aff2c277c2f1f0943a098888c1
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"

- name: "sratools ncbisettings test_sratools_ncbisettings_with_bad_existing"
  command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_bad_existing -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow_mount.config
  tags:
    - "sratools"
    - "sratools/ncbisettings"
  exit_code: 1
  stdout:
    contains:
      - "Command error:"
      - "missing the required entries"
      - "/LIBS/GUID"
      - "/libs/cloud/report_instance_identity"
      - "Feel free to add the following"
  files:
    - path: "output/sratools/user-settings.mkfg"
      should_exist: false
    - path: output/sratools/versions.yml
      should_exist: false

- name: "sratools ncbisettings test_sratools_ncbisettings_with_nonexisting"
  command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_nonexisting -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow.config
  tags:
    - "sratools"
    - "sratools/ncbisettings"
  files:
    - path: "output/sratools/user-settings.mkfg"
      contains:
        - "/LIBS/GUID"
        - "/libs/cloud/report_instance_identity"
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"