mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
41 lines
1.6 KiB
YAML
41 lines
1.6 KiB
YAML
|
name: cellranger_count
|
||
|
|
description: Module to use Cell Ranger's pipelines analyze sequencing data produced from Chromium Single Cell Gene Expression.
|
||
|
|
keywords:
|
||
|
|
- align
|
||
|
|
- count
|
||
|
|
- reference
|
||
|
|
tools:
|
||
|
|
- cellranger:
|
||
|
|
description: Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.
|
||
|
|
homepage: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger
|
||
|
|
documentation: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
|
||
|
|
tool_dev_url: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
|
||
|
|
doi: ""
|
||
|
|
licence: 10x Genomics EULA
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: |
|
||
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
||
|
|
respectively.
|
||
|
|
- reference:
|
||
|
|
type: folder
|
||
|
|
description: Folder containing all the reference indices needed by Cell Ranger
|
||
|
|
output:
|
||
|
|
- outs:
|
||
|
|
type: file
|
||
|
|
description: Files containing the outputs of Cell Ranger
|
||
|
|
pattern: "sample-${meta.gem}/outs/*"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "versions.yml"
|
||
|
|
authors:
|
||
|
|
- "@ggabernet"
|
||
|
|
- "@Emiller88"
|