mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 13:23:09 +00:00
27 lines
966 B
Text
27 lines
966 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { MINIMAP2_ALIGN } from '../../../../software/minimap2/align/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_minimap2_align_single_end {
|
||
|
|
|
||
|
|
def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
|
||
|
|
|
||
|
|
def input = []
|
||
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
||
|
|
[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true) ] ]
|
||
|
|
MINIMAP2_ALIGN ( input, fasta )
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_minimap2_align_paired_end {
|
||
|
|
|
||
|
|
def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
|
||
|
|
|
||
|
|
def input = []
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true),
|
||
|
|
file("${launchDir}/tests/data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ]
|
||
|
|
MINIMAP2_ALIGN ( input, fasta )
|
||
|
|
}
|