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24 lines
505 B
Text
24 lines
505 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BEDTOOLS_GENOMECOV } from '../main.nf' addParams( options: [publish_dir:'test_bed_file'] )
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// Define input channels
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// Run the workflow
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workflow test_bed_file {
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def input = []
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input = [ [ id:'test'],
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[ file("${baseDir}/input/JK2067_downsampled_s0.1.bam", checkIfExists: true),] ]
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BEDTOOLS_GENOMECOV (
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input,
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file("${baseDir}/input/genome.sizes", checkIfExists: true) )
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}
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workflow {
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test_bed_file()
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}
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