nf-core_modules/software/bedtools/merge/test/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BEDTOOLS_MERGE } from '../main.nf' addParams( options: [publish_dir:'test_bed_file'] )
// Define input channels
// TODO ensure input file is presorted (could use output of sort module)
// Run the workflow
workflow test_bed_file {
def input = []
input = [ [ id:'test'],
[ file("${baseDir}/input/A.bed", checkIfExists: true),] ]
BEDTOOLS_MERGE( input )
}
workflow {
test_bed_file()
}