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nf-core_modules/tests/software/spades/test.yml

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Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- name: spades single end
command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
tags:
- spades
- spades_single_end
files:
- path: output/spades/test.assembly.gfa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: b2616d2beba83ab7d361b54778d1e759
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.contigs.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: 2690fefde046bc904e90df09a065257a
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.scaffolds.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: 2690fefde046bc904e90df09a065257a
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
- name: spades paired end
command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
tags:
- spades
- spades_paired_end
files:
- path: output/spades/test.assembly.gfa
Version bumps and minor module updates (#406) * Version bumps and minor module updates * Fix Pangolin tests * Fix SPAdes tests * stageAs @phue
2021-04-06 12:38:41 +00:00
md5sum: faf76135ee390606b899c0197dc38e04
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.contigs.fa
Version bumps and minor module updates (#406) * Version bumps and minor module updates * Fix Pangolin tests * Fix SPAdes tests * stageAs @phue
2021-04-06 12:38:41 +00:00
md5sum: 6148e25b33890c80f176f90f2dd88989
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
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