mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
52 lines
1.7 KiB
YAML
52 lines
1.7 KiB
YAML
|
name: blast_makeblastdb
|
||
|
|
description: Builds a BLAST database
|
||
|
|
keywords:
|
||
|
|
- fasta
|
||
|
|
- blast
|
||
|
|
- database
|
||
|
|
tools:
|
||
|
|
- blast:
|
||
|
|
description: |
|
||
|
|
BLAST finds regions of similarity between biological sequences.
|
||
|
|
homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
|
||
|
|
documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
|
||
|
|
doi: 10.1016/S0022-2836(05)80360-2
|
||
|
|
params:
|
||
|
|
- outdir:
|
||
|
|
type: string
|
||
|
|
description: |
|
||
|
|
The pipeline's output directory. By default, the module will
|
||
|
|
output files into `$params.outdir/<SOFTWARE>`
|
||
|
|
- publish_dir_mode:
|
||
|
|
type: string
|
||
|
|
description: |
|
||
|
|
Value for the Nextflow `publishDir` mode parameter.
|
||
|
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
||
|
|
- enable_conda:
|
||
|
|
type: boolean
|
||
|
|
description: |
|
||
|
|
Run the module with Conda using the software specified
|
||
|
|
via the `conda` directive
|
||
|
|
- singularity_pull_docker_container:
|
||
|
|
type: boolean
|
||
|
|
description: |
|
||
|
|
Instead of directly downloading Singularity images for use with Singularity,
|
||
|
|
force the workflow to pull and convert Docker containers instead.
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Input fasta file
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
output:
|
||
|
|
- db:
|
||
|
|
type: directory
|
||
|
|
description: Output directory containing blast database files
|
||
|
|
pattern: "*"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
authors:
|
||
|
|
- "@joseespinosa"
|
||
|
|
- "@drpatelh"
|