nf-core_modules/software/trimgalore/meta.yml

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name: Trim Galore!
description: Trim FastQ files using Trim Galore!
keywords:
- trimming
- adapters
- sequencing adapters
tools:
- fastqc:
description: |
A wrapper tool around Cutadapt and FastQC to consistently apply quality
and adapter trimming to FastQ files, with some extra functionality for
MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
documentation: https://github.com/FelixKrueger/TrimGalore/blob/master/Docs/Trim_Galore_User_Guide.md
input:
-
- sample_id:
type: string
description: Sample identifier
- reads:
type: file
description: Input FastQ file, or pair of files
output:
-
- sample_id:
type: string
description: Sample identifier
- trimmed_fastq:
type: file
description: Trimmed FastQ files
pattern: "*fq.gz"
-
- report:
type: file
description: Trim Galore! trimming report
pattern: "*trimming_report.txt"
authors:
- "@ewels"
- "@FelixKrueger"