mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
15 lines
519 B
Text
15 lines
519 B
Text
|
params.species = "homo_sapiens"
|
||
|
|
params.build = "GRCh38"
|
||
|
|
|
||
|
|
process {
|
||
|
|
|
||
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
||
|
|
withName: 'test_vcf2maf_no_vep:VCF2MAF' {
|
||
|
|
ext.args = "--ncbi-build ${params.build} --species ${params.species} --inhibit-vep"
|
||
|
|
container = "quay.io/biocontainers/vcf2maf:1.6.21--hdfd78af_0"
|
||
|
|
}
|
||
|
|
withName: 'test_vcf2maf_vep:VCF2MAF' {
|
||
|
|
ext.args = "--ncbi-build ${params.build} --species ${params.species}"
|
||
|
|
}
|
||
|
|
}
|