nf-core_modules/.github/workflows/fastqc.yml

name: FastQC
on:
  push:
    paths: tools/fastqc/*
  pull_request:
    paths: tools/fastqc/*

jobs:
  run_multiqc:
    runs-on: ubuntu-latest

    steps:

    # Check out the repository
    - uses: actions/checkout@v1

    # Test the module
    - uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0
      run: nextflow run ./tools/fastqc/test/
Added TrimGalore 2019-12-05 14:53:38 +00:00			`name: FastQC`
Refactor GitHub actions workflows 2019-12-05 14:44:10 +00:00			`on:`
			`push:`
			`paths: tools/fastqc/*`
			`pull_request:`
			`paths: tools/fastqc/*`

			`jobs:`
			`run_multiqc:`
			`runs-on: ubuntu-latest`

			`steps:`

			`# Check out the repository`
			`- uses: actions/checkout@v1`

			`# Test the module`
GitHub actions - run nextflow in a docker image 2019-12-05 14:57:32 +00:00			`- uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0`
			`run: nextflow run ./tools/fastqc/test/`