nf-core_modules/tests/modules/freebayes/test.yml

- name: freebayes test_freebayes
  command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 81d3e6ce7b6343d088b779567c3803eb
    - path: output/freebayes/versions.yml
      md5sum: 53651eb835af65df829241257584a7d2

- name: freebayes test_freebayes_bed
  command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 02645d014a63485162a7789007373b2a
    - path: output/freebayes/versions.yml
      md5sum: becc93c8a0be580c09d55b955d60a5e1

- name: freebayes test_freebayes_cram
  command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 3d0bfcd2129c62f8863952fa4c1054db
    - path: output/freebayes/versions.yml
      md5sum: 2e5b266edfc6cab81353cfc72c00f67c

- name: freebayes test_freebayes_somatic
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 22fec868210ba3baf685b214bfd8e74b
    - path: output/freebayes/versions.yml
      md5sum: 8fbdb4c052fb3e42b5508a966125fa05

- name: freebayes test_freebayes_somatic_cram_intervals
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 527cf2937067bbd4117d95fd472bb928
    - path: output/freebayes/versions.yml
      md5sum: af97e3dfdc086188739907c3460e49e0