mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
47 lines
1.1 KiB
YAML
47 lines
1.1 KiB
YAML
|
name: pairtools_restrict
|
||
|
|
description: Assign restriction fragments to pairs
|
||
|
|
keywords:
|
||
|
|
- sort
|
||
|
|
tools:
|
||
|
|
- pairtools:
|
||
|
|
description: CLI tools to process mapped Hi-C data
|
||
|
|
homepage: http://pairtools.readthedocs.io/
|
||
|
|
documentation: http://pairtools.readthedocs.io/
|
||
|
|
tool_dev_url: https://github.com/mirnylab/pairtools
|
||
|
|
doi: ""
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- pairs:
|
||
|
|
type: file
|
||
|
|
description: pairs file
|
||
|
|
- frag:
|
||
|
|
type: file
|
||
|
|
description: |
|
||
|
|
a tab-separated BED file with the positions of restriction fragments
|
||
|
|
(chrom, start, end).
|
||
|
|
Can be generated using cooler digest.
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- restrict:
|
||
|
|
type: file
|
||
|
|
description: Filtered pairs file
|
||
|
|
pattern: "*.{pairs.gz}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jianhong"
|