mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
56 lines
1.5 KiB
YAML
56 lines
1.5 KiB
YAML
|
name: gatk4_selectvariants
|
||
|
|
description: Select a subset of variants from a VCF file
|
||
|
|
keywords:
|
||
|
|
- gatk
|
||
|
|
- gatk4
|
||
|
|
- selectvariants
|
||
|
|
- vcf
|
||
|
|
tools:
|
||
|
|
- gatk4:
|
||
|
|
description: |
|
||
|
|
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
|
||
|
|
with a primary focus on variant discovery and genotyping. Its powerful processing engine
|
||
|
|
and high-performance computing features make it capable of taking on projects of any size.
|
||
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
||
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us/articles/360036362532-SelectVariants
|
||
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
||
|
|
doi: 10.1158/1538-7445.AM2017-3590
|
||
|
|
licence: ["Apache-2.0"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test']
|
||
|
|
- vcf:
|
||
|
|
type: list
|
||
|
|
description: VCF(.gz) file
|
||
|
|
pattern: "*.{vcf,vcf.gz}"
|
||
|
|
- vcf_idx:
|
||
|
|
type: list
|
||
|
|
description: VCF file index
|
||
|
|
pattern: "*.{idx,tbi}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: Compressed VCF file
|
||
|
|
pattern: "*.selectvariants.vcf.gz"
|
||
|
|
- vcf_tbi:
|
||
|
|
type: list
|
||
|
|
description: VCF file index
|
||
|
|
pattern: "*.{idx,tbi}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@mjcipriano"
|