2021-05-12 13:56:46 +00:00
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name: gffread
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description: Validate, filter, convert and perform various other operations on GFF files
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keywords:
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- gff
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- conversion
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- validation
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tools:
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- gffread:
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description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
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homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
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documentation: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
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tool_dev_url: https://github.com/gpertea/gffread
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doi: 10.12688/f1000research.23297.1
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2022-02-15 11:15:27 +00:00
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licence: ["MIT"]
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2021-05-12 13:56:46 +00:00
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input:
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- gff:
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2022-02-15 11:15:27 +00:00
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type: file
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description: A reference file in either the GFF3, GFF2 or GTF format.
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pattern: "*.{gff, gtf}"
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2021-05-12 13:56:46 +00:00
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output:
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- gtf:
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type: file
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description: GTF file resulting from the conversion of the GFF input file
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2021-09-15 18:55:08 +00:00
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pattern: "*.{gtf}"
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2021-10-03 07:20:26 +00:00
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- versions:
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2021-05-12 13:56:46 +00:00
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type: file
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2021-10-03 07:20:26 +00:00
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description: File containing software versions
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2021-09-27 08:41:24 +00:00
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pattern: "versions.yml"
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2021-05-12 13:56:46 +00:00
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authors:
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- "@emiller88"
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