nf-core_modules/modules/tiddit/sv/meta.yml

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name: tiddit_sv
description: Identify chromosomal rearrangements.
keywords:
- structural
- variants
- vcf
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tools:
- sv:
description: Search for structural variants.
homepage: https://github.com/SciLifeLab/TIDDIT
documentation: https://github.com/SciLifeLab/TIDDIT/blob/master/README.md
doi: 10.12688/f1000research.11168.1
licence: ["GPL-3.0-or-later"]
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input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
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- input:
type: file
description: BAM/CRAM file
pattern: "*.{bam,cram}"
- index:
type: file
description: BAM/CRAM index file
pattern: "*.{bai,crai}"
- fasta:
type: file
description: Input FASTA file
pattern: "*.{fasta,fa}"
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- bwa_index:
type: file
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description: BWA genome index files
pattern: "Directory containing BWA index *.{amb,ann,bwt,pac,sa}"
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output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: vcf
pattern: "*.{vcf}"
- ploidy:
type: file
description: tab
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pattern: "*.{ploidies.tab}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@maxulysse"