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nf-core_modules/tests/modules/deepvariant/test.yml

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Update version & add intervals usage (#1214) * Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths
2022-01-17 15:40:31 +00:00
- name: deepvariant test_deepvariant
command: nextflow run tests/modules/deepvariant -entry test_deepvariant -c tests/config/nextflow.config
module: deepvariant (#572) * Add stubs for deepvariant [ci skip] * Update the stubs for deepvariant [ci skip] * functional with google docker image * cleanup * consume docker container within singularity executor * update the meta.yml file and ask for review * tweak the input channel shape and test data * tweak input data [ci skip] * update for the new syntax * remove the functions and rename meta vars * Update the arguments mechanism * update chr, region and checksum Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2022-01-17 10:25:36 +00:00
tags:
- deepvariant
files:
Update version & add intervals usage (#1214) * Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths
2022-01-17 15:40:31 +00:00
- path: output/deepvariant/test_out.g.vcf.gz
md5sum: c4c65a3eaf62d6fbe0aba0a414318c8d
module: deepvariant (#572) * Add stubs for deepvariant [ci skip] * Update the stubs for deepvariant [ci skip] * functional with google docker image * cleanup * consume docker container within singularity executor * update the meta.yml file and ask for review * tweak the input channel shape and test data * tweak input data [ci skip] * update for the new syntax * remove the functions and rename meta vars * Update the arguments mechanism * update chr, region and checksum Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2022-01-17 10:25:36 +00:00
- path: output/deepvariant/test_out.vcf.gz
Update version & add intervals usage (#1214) * Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths
2022-01-17 15:40:31 +00:00
md5sum: ad964f68ac1d1b2720a9a4e0b6a3a389
- path: output/deepvariant/versions.yml
md5sum: 51572055ca5c07fc4001b25a9c273bf8
- name: deepvariant test_deepvariant_cram_intervals
command: nextflow run tests/modules/deepvariant -entry test_deepvariant_cram_intervals -c tests/config/nextflow.config
tags:
- deepvariant
files:
module: deepvariant (#572) * Add stubs for deepvariant [ci skip] * Update the stubs for deepvariant [ci skip] * functional with google docker image * cleanup * consume docker container within singularity executor * update the meta.yml file and ask for review * tweak the input channel shape and test data * tweak input data [ci skip] * update for the new syntax * remove the functions and rename meta vars * Update the arguments mechanism * update chr, region and checksum Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2022-01-17 10:25:36 +00:00
- path: output/deepvariant/test_out.g.vcf.gz
Update version & add intervals usage (#1214) * Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths
2022-01-17 15:40:31 +00:00
md5sum: c4c65a3eaf62d6fbe0aba0a414318c8d
- path: output/deepvariant/test_out.vcf.gz
md5sum: ad964f68ac1d1b2720a9a4e0b6a3a389
- path: output/deepvariant/versions.yml
md5sum: 7d9293db0d44423b114abc7116feb967
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