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16 lines
719 B
YAML
16 lines
719 B
YAML
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- name: ariba run test_ariba_run
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command: nextflow run ./tests/modules/ariba/run -entry test_ariba_run -c ./tests/config/nextflow.config -c ./tests/modules/ariba/run/nextflow.config
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tags:
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- ariba
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- ariba/run
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files:
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- path: output/ariba/test/assembled_genes.fa.gz
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- path: output/ariba/test/assembled_seqs.fa.gz
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- path: output/ariba/test/assemblies.fa.gz
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- path: output/ariba/test/debug.report.tsv
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contains: ["ariba_ref_name", "reads", "free_text", "known_var_change"]
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- path: output/ariba/test/report.tsv
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contains: ["ariba_ref_name", "reads", "free_text", "known_var_change"]
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- path: output/ariba/test/version_info.txt
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contains: ["ARIBA", "Python", "OK", "True"]
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