nf-core_modules/modules/seqkit/pair/meta.yml

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name: seqkit_pair
description: match up paired-end reads from two fastq files
keywords:
- seqkit
- pair
tools:
- seqkit:
description: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
homepage: https://bioinf.shenwei.me/seqkit/usage/
documentation: https://bioinf.shenwei.me/seqkit/usage/
tool_dev_url: https://github.com/shenwei356/seqkit/
doi: "10.1371/journal.pone.0163962"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input paired-end FastQ files.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- reads:
type: file
description: Paired fastq reads
pattern: "*.paired.fastq.gz"
- unpaired_reads:
type: file
description: Unpaired reads (optional)
pattern: "*.unpaired.fastq.gz"
authors:
- "@sateeshperi"
- "@mjcipriano"
- "@hseabolt"