mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
|
name: gffread
|
||
|
|
description: Validate, filter, convert and perform various other operations on GFF files
|
||
|
|
keywords:
|
||
|
|
- gff
|
||
|
|
- conversion
|
||
|
|
- validation
|
||
|
|
tools:
|
||
|
|
- gffread:
|
||
|
|
description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
|
||
|
|
homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
|
||
|
|
documentation: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
|
||
|
|
tool_dev_url: https://github.com/gpertea/gffread
|
||
|
|
doi: 10.12688/f1000research.23297.1
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gff:
|
||
|
|
type: file
|
||
|
|
description: A GFF file in either the GFF3 or GFF2 format.
|
||
|
|
patter: "*.gff"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gtf:
|
||
|
|
type: file
|
||
|
|
description: GTF file resulting from the conversion of the GFF input file
|
||
|
|
pattern: "*.gtf"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@emiller88"
|