mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
|
name: homer_annotatepeaks
|
||
|
|
description: Annotate peaks with homer
|
||
|
|
keywords:
|
||
|
|
- annotations
|
||
|
|
- peaks
|
||
|
|
- bed
|
||
|
|
tools:
|
||
|
|
- cuatadapt:
|
||
|
|
description: |
|
||
|
|
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
|
||
|
|
documentation: http://homer.ucsd.edu/homer/
|
||
|
|
doi: 10.1016/j.molcel.2010.05.004.
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- peaks:
|
||
|
|
type: file
|
||
|
|
description: The peak files in bed format
|
||
|
|
pattern: "*.bed"
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Fasta file of reference genome
|
||
|
|
pattern: "*.fasta"
|
||
|
|
- gtf:
|
||
|
|
type: file
|
||
|
|
description: GTF file of reference genome
|
||
|
|
pattern: "*.gtf"
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- annotated_peaks:
|
||
|
|
type: file
|
||
|
|
description: The annotated peaks
|
||
|
|
pattern: "*annotatePeaks.txt"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
authors:
|
||
|
|
- "@drpatelh"
|
||
|
|
- "@kevinmenden"
|