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nf-core_modules/tests/software/hmmer/hmmalign/test.yml

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New module to use hmmalign from HMMER to align sequences (#470) * Ignore vim tmp files * Added hmmalign module, not yet tests * Test output * Replaced functions.nf for hmmalign with upstream * Update software/hmmer/hmmalign/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/hmmer/hmmalign/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/hmmer/hmmalign/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/hmmer/hmmalign/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/hmmer/hmmalign/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/hmmer/hmmalign/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/hmmer/hmmalign/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-28 10:21:24 +00:00
- name: hmmer hmmalign test_hmmer_hmmalign
command: nextflow run tests/software/hmmer/hmmalign -entry test_hmmer_hmmalign -c tests/config/nextflow.config
tags:
- hmmer
- hmmer/hmmalign
files:
- path: output/hmmer/test.sthlm.gz
md5sum: ddaa8b96291edf4e1a929a224329161b
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