mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
16 lines
542 B
Text
16 lines
542 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { RSEQC_JUNCTIONANNOTATION } from '../../../../software/rseqc/junctionannotation/main.nf' addParams(options: [:])
|
||
|
|
|
||
|
|
workflow test_rseqc_junctionannotation {
|
||
|
|
input = [ [ id:'test', single_end: false ], // meta map
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
bed = file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true)
|
||
|
|
|
||
|
|
RSEQC_JUNCTIONANNOTATION ( input, bed )
|
||
|
|
}
|