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nf-core_modules/tests/modules/controlfreec/freec2bed/test.yml

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add freec2bed script (#1453)
2022-03-25 19:31:52 +00:00
- name: controlfreec freec2bed test_controlfreec_freec2bed
command: nextflow run tests/modules/controlfreec/freec2bed -entry test_controlfreec_freec2bed -c tests/config/nextflow.config
tags:
- controlfreec/freec2bed
- controlfreec
files:
- path: output/controlfreec/test.bed
md5sum: abe10b7ce94ba903503e697394c17297
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504) * Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment
2022-04-08 09:43:40 +00:00
- name: controlfreec freec2bed test_controlfreec_freec2bed_single
command: nextflow run tests/modules/controlfreec/freec2bed -entry test_controlfreec_freec2bed_single -c tests/config/nextflow.config -stub-run
tags:
- controlfreec/freec2bed
- controlfreec
files:
- path: output/controlfreec/test.bed
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