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nf-core_modules/tests/modules/controlfreec/makegraph/test.yml

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add makegraph script (#1452) * add makegraph script * allow renaming of output files * allow renaming of output files
2022-03-25 19:49:08 +00:00
- name: controlfreec makegraph test_controlfreec_makegraph
command: nextflow run tests/modules/controlfreec/makegraph -entry test_controlfreec_makegraph -c tests/config/nextflow.config
tags:
- controlfreec
- controlfreec/makegraph
files:
- path: output/controlfreec/test_BAF.png
md5sum: f9d977839e09c7e2472d970bd4aa834c
- path: output/controlfreec/test_ratio.log2.png
md5sum: b3c7916b1b4951a0cc3da20d8e9e0262
- path: output/controlfreec/test_ratio.png
md5sum: 1435b29536b3b1555b4c423f8f4fb000
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504) * Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment
2022-04-08 09:43:40 +00:00
- name: controlfreec makegraph test_controlfreec_makegraph_single
command: nextflow run tests/modules/controlfreec/makegraph -entry test_controlfreec_makegraph_single -c tests/config/nextflow.config -stub-run
tags:
- controlfreec
- controlfreec/makegraph
files:
- path: output/controlfreec/test_BAF.png
- path: output/controlfreec/test_ratio.log2.png
- path: output/controlfreec/test_ratio.png
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