mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
17 lines
581 B
Text
17 lines
581 B
Text
|
process {
|
||
|
|
||
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
||
|
|
||
|
withName: 'test_gatk4_collectreadcounts_hdf5:GATK4_COLLECTREADCOUNTS'{
|
||
|
ext.args = "--interval-merging-rule OVERLAPPING_ONLY"
|
||
|
}
|
||
|
|
||
|
withName: 'test_gatk4_collectreadcounts_tsv:GATK4_COLLECTREADCOUNTS' {
|
||
|
ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
|
||
|
}
|
||
|
|
||
|
withName: 'test_gatk4_collectreadcounts_cram:GATK4_COLLECTREADCOUNTS' {
|
||
|
ext.args = "--format TSV --interval-merging-rule OVERLAPPING_ONLY"
|
||
|
}
|
||
|
|
||
|
}
|