2020-08-07 11:21:47 +00:00
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name: trimgalore
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2019-12-05 14:53:38 +00:00
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on:
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2020-07-16 15:11:34 +00:00
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push:
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2020-07-16 15:14:57 +00:00
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paths:
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2020-08-07 11:21:47 +00:00
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- software/trimgalore/**
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- .github/workflows/trimgalore.yml
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2020-07-16 15:14:57 +00:00
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- tests
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2019-12-05 14:53:38 +00:00
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pull_request:
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2020-07-16 15:14:57 +00:00
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paths:
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2020-08-07 11:21:47 +00:00
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- software/trimgalore/**
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- .github/workflows/trimgalore.yml
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2020-07-16 15:14:57 +00:00
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- tests
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2019-12-05 14:53:38 +00:00
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jobs:
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2020-08-07 11:21:47 +00:00
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ci_test:
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2019-12-05 14:53:38 +00:00
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runs-on: ubuntu-latest
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2020-07-11 15:14:14 +00:00
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env:
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NXF_ANSI_LOG: false
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2019-12-05 14:53:38 +00:00
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steps:
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2020-07-16 15:11:34 +00:00
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- uses: actions/checkout@v2
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2019-12-05 14:53:38 +00:00
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2019-12-05 15:03:00 +00:00
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- name: Install Nextflow
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run: |
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2020-08-07 11:21:47 +00:00
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export NXF_VER="20.07.1"
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2019-12-05 15:03:00 +00:00
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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2019-12-05 14:53:38 +00:00
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# Test the module
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2020-08-07 11:21:47 +00:00
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- run: nextflow run ./software/trimgalore/test/ -profile docker
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