nf-core_modules/software/seqkit/split2/meta.yml

60 lines
1.9 KiB
YAML
Raw Normal View History

2021-02-17 16:09:24 +00:00
name: seqkit_split2
description: Split single or paired-end fastq.gz files
keywords:
- split
- fastq
tools:
- seqkit:
description: |
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
homepage: https://github.com/shenwei356/seqkit
documentation: https://bioinf.shenwei.me/seqkit/
doi: 10.1371/journal.pone.0163962
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
2021-02-17 16:09:24 +00:00
type: file
description: FastQ files
2021-02-23 14:40:22 +00:00
pattern: "*.{fq.gz/fastq.gz}"
2021-02-17 16:09:24 +00:00
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: Split fastq files
2021-02-23 14:40:22 +00:00
pattern: "*.{fq.gz/fastq.gz}"
2021-02-17 16:09:24 +00:00
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@FriederikeHanssen"