nf-core_modules/tests/software/artic/guppyplex/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { ARTIC_GUPPYPLEX } from '../../../../software/artic/guppyplex/main.nf' addParams( options: [:] )
process STAGE_FASTQ_DIR {
input:
tuple val(meta), path(fastq_file)
output:
tuple val(meta), path('fastq'), emit: fastq_dir
script:
"""
mkdir fastq
mv ${fastq_file} fastq
"""
}
workflow test_artic_guppyplex {
input = [ [ id:'test' ],
file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
STAGE_FASTQ_DIR ( input )
ARTIC_GUPPYPLEX ( STAGE_FASTQ_DIR.out.fastq_dir )
}