nf-core_modules/tests/software/gatk4/splitncigarreads/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { GATK4_SPLITNCIGARREADS } from '../../../../software/gatk4/splitncigarreads/main.nf' addParams( options: [:] )
workflow test_gatk4_splitncigarreads {
input = [ [ id:'test' ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true) ]
]
fasta = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
file(params.test_data['sarscov2']['genome']['genome_fasta_fai'], checkIfExists: true),
file(params.test_data['sarscov2']['genome']['genome_dict'], checkIfExists: true)
]
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GATK4_SPLITNCIGARREADS ( input, fasta )
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}