nf-core_modules/software/homer/annotatepeaks/meta.yml

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name: homer_annotatepeaks
description: Annotate peaks with homer
keywords:
- annotations
- peaks
- bed
tools:
- cuatadapt:
description: |
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
documentation: http://homer.ucsd.edu/homer/
doi: 10.1016/j.molcel.2010.05.004.
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- peaks:
type: file
description: The peak files in bed format
pattern: "*.bed"
- fasta:
type: file
description: Fasta file of reference genome
pattern: "*.fasta"
- gtf:
type: file
description: GTF file of reference genome
pattern: "*.gtf"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- annotated_peaks:
type: file
description: The annotated peaks
pattern: "*annotatePeaks.txt"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@kevinmenden"