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nf-core_modules/tests/modules/pydamage/analyze/test.yml

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Module new version reporting fixes (#753) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Fix IQ tree * Fix picard markdup and merge sam * Fix plink/vcf version * Fix plink version output * Fix prokka version command * Fix pydamage * Try fixing markduplicates * Fix snpEff * Fix vcftools version * Fix pydamage and filtersamreads test run * Fix MarkDuplicates tests * Add missing unsorted checks * Remove MD5 sym due to stochasicity in BAM file
2021-09-28 09:51:19 +00:00
- name: pydamage analyze test workflow
Add pydamage analyze module (#705) * add pydamage module * remove TODOs * split module by subcommands * update version parsing * remove forgotten TODOs * update module names * remove old holistic module * Update modules/pydamage/analyze/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * add keywords * simplify PR to analyze subcommand Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-09-16 12:03:51 +00:00
command: nextflow run tests/modules/pydamage/analyze -entry test_pydamage -c tests/config/nextflow.config
tags:
- pydamage
- pydamage/analyze
files:
- path: output/pydamage/pydamage_results/pydamage_results.csv
md5sum: 6847e0d5aa6dba85bbd2dd509772b7a0
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