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20 lines
640 B
Text
20 lines
640 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ADAPTERREMOVAL } from '../../../modules/adapterremoval/main.nf'
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include { ADAPTERREMOVALFIXPREFIX } from '../../../modules/adapterremovalfixprefix/main.nf'
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workflow test_adapterremovalfixprefix {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
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]
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]
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ADAPTERREMOVAL ( input, [] )
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ADAPTERREMOVALFIXPREFIX ( ADAPTERREMOVAL.out.collapsed )
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}
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