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36 lines
878 B
Text
36 lines
878 B
Text
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process FASTK_HISTEX {
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tag "$meta.id"
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label 'process_low'
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if (params.enable_conda) {
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error "Conda environments cannot be used when using the FastK tool. Please use docker or singularity containers."
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}
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container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.0'
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input:
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tuple val(meta), path(histogram)
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output:
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tuple val(meta), path("*.hist"), emit: hist
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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def FASTK_VERSION = 'f18a4e6d2207539f7b84461daebc54530a9559b0'
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"""
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Histex \\
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$args \\
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$histogram \\
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> ${prefix}.hist
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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fastk: $FASTK_VERSION
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END_VERSIONS
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"""
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}
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