mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
|
name: "bclconvert"
|
||
|
|
description: Demultiplex Illumina BCL files
|
||
|
|
keywords:
|
||
|
|
- demultiplex
|
||
|
|
- illumina
|
||
|
|
- fastq
|
||
|
|
tools:
|
||
|
|
- "bclconvert":
|
||
|
|
description: "Demultiplex Illumina BCL files"
|
||
|
|
homepage: "https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html"
|
||
|
|
documentation: "https://support-docs.illumina.com/SW/BCL_Convert/Content/SW/FrontPages/BCL_Convert.htm"
|
||
|
|
licence: "ILLUMINA"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- samplesheet:
|
||
|
|
type: file
|
||
|
|
description: "Input samplesheet"
|
||
|
|
pattern: "*.{csv}"
|
||
|
|
- run_dir:
|
||
|
|
type: directory
|
||
|
|
description: "Input run directory containing RunInfo.xml and BCL data"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- fastq:
|
||
|
|
type: file
|
||
|
|
description: Demultiplexed FASTQ files
|
||
|
|
pattern: "*.{fastq.gz}"
|
||
|
|
- reports:
|
||
|
|
type: file
|
||
|
|
description: Demultiplexing Reports
|
||
|
|
pattern: "Reports/*.{csv,xml}"
|
||
|
|
- logs:
|
||
|
|
type: file
|
||
|
|
description: Log files
|
||
|
|
pattern: "Logs/*.{log,txt}"
|
||
|
|
- interop:
|
||
|
|
type: file
|
||
|
|
description: Interop files
|
||
|
|
pattern: "Interop/*.{bin}"
|
||
|
|
authors:
|
||
|
|
- "@matthdsm"
|