nf-core_modules/tests/modules/hmmcopy/readcounter/test.yml

- name: hmmcopy readcounter test_hmmcopy_readcounter
  command: nextflow run tests/modules/hmmcopy/readcounter -entry test_hmmcopy_readcounter -c tests/config/nextflow.config
  tags:
    - hmmcopy
    - hmmcopy/readcounter
  files:
    - path: output/hmmcopy/test.wig
      md5sum: 4682778422b9a2510a3cb70bd13ccd08
    - path: output/hmmcopy/versions.yml
      md5sum: 624a85e6a1bc61abc33cac03aea33a1e
readcounter module for hmmcopy (#1001) * readcounter module for hmmcopy * Changed version number * Fix indentation * Update main.nf * Update modules/hmmcopy/readcounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> 2021-11-02 11:01:13 +00:00			`- name: hmmcopy readcounter test_hmmcopy_readcounter`
New subtool: hmmcopy/generatemap (#1168) * Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> 2021-12-15 15:57:42 +00:00			`command: nextflow run tests/modules/hmmcopy/readcounter -entry test_hmmcopy_readcounter -c tests/config/nextflow.config`
readcounter module for hmmcopy (#1001) * readcounter module for hmmcopy * Changed version number * Fix indentation * Update main.nf * Update modules/hmmcopy/readcounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> 2021-11-02 11:01:13 +00:00			`tags:`
			`- hmmcopy`
			`- hmmcopy/readcounter`
			`files:`
			`- path: output/hmmcopy/test.wig`
New subtool: hmmcopy/generatemap (#1168) * Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> 2021-12-15 15:57:42 +00:00			`md5sum: 4682778422b9a2510a3cb70bd13ccd08`
			`- path: output/hmmcopy/versions.yml`
			`md5sum: 624a85e6a1bc61abc33cac03aea33a1e`