nf-core_modules/tests/software/ivar/trim/main.nf

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2021-02-13 00:02:10 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { IVAR_TRIM } from '../../../../software/ivar/trim/main.nf' addParams([:])
workflow test_ivar_trim {
bed_file = file("${launchDir}/tests/data/bed/test-sc2-artic-v3.bed", checkIfExists: true)
def input = []
input = [ [ id:'test'],
file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true) ]
main:
IVAR_TRIM ( input, bed_file )
}