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41 lines
1.2 KiB
YAML
41 lines
1.2 KiB
YAML
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name: dshbio_exportsegments
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description: Export assembly segment sequences in GFA 1.0 format to FASTA format
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keywords:
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- gfa
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- assembly
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- segment
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tools:
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- dshbio:
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description: |
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Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
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graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
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or later.
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homepage: https://github.com/heuermh/dishevelled-bio
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documentation: https://github.com/heuermh/dishevelled-bio
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Assembly segments in GFA 1.0 format
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pattern: "*.{gfa}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Assembly segment sequences in FASTA format
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pattern: "*.{fa}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@heuermh"
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