2020-03-06 14:31:44 +00:00
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name: cutadapt
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on:
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2020-07-16 15:11:34 +00:00
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push:
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2020-07-16 15:14:57 +00:00
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paths:
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- software/cutadapt/**
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- .github/workflows/cutadapt.yml
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- tests
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2020-03-06 14:31:44 +00:00
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pull_request:
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2020-07-16 15:14:57 +00:00
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paths:
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- software/cutadapt/**
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- .github/workflows/cutadapt.yml
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- tests
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2020-03-06 14:31:44 +00:00
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jobs:
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run_ci_test:
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runs-on: ubuntu-latest
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2020-07-11 15:14:14 +00:00
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env:
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NXF_ANSI_LOG: false
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2020-03-06 14:31:44 +00:00
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steps:
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2020-03-06 14:41:37 +00:00
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- uses: actions/checkout@v2
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2020-07-11 15:14:14 +00:00
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2020-03-06 14:31:44 +00:00
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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2020-03-06 14:56:33 +00:00
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- name: Test module with paired-end data
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run: |
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2020-07-11 15:14:14 +00:00
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cd software/cutadapt/test/
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nextflow run .
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2020-03-06 14:56:33 +00:00
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- name: Test module with single-end data
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run: |
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2020-07-11 15:14:14 +00:00
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cd software/cutadapt/test/
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nextflow run . --single_end
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