mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
51 lines
1.4 KiB
YAML
51 lines
1.4 KiB
YAML
|
name: controlfreec_assesssignificance
|
||
|
|
description: Add both Wilcoxon test and Kolmogorov-Smirnov test p-values to each CNV output of FREEC
|
||
|
|
keywords:
|
||
|
|
- cna
|
||
|
|
- cnv
|
||
|
|
- somatic
|
||
|
|
- single
|
||
|
|
- tumor-only
|
||
|
|
tools:
|
||
|
|
- controlfreec/assesssignificance:
|
||
|
|
description: Copy number and genotype annotation from whole genome and whole exome sequencing data.
|
||
|
|
homepage: http://boevalab.inf.ethz.ch/FREEC
|
||
|
|
documentation: http://boevalab.inf.ethz.ch/FREEC/tutorial.html
|
||
|
|
tool_dev_url: https://github.com/BoevaLab/FREEC/
|
||
|
|
doi: "10.1093/bioinformatics/btq635"
|
||
|
|
licence: ["GPL >=2"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
# Only when we have meta
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- cnvs:
|
||
|
|
type: file
|
||
|
|
description: _CNVs file generated by FREEC
|
||
|
|
pattern: "*._CNVs"
|
||
|
|
- ratio:
|
||
|
|
type: file
|
||
|
|
description: ratio file generated by FREEC
|
||
|
|
pattern: "*.ratio.txt"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- p_value_txt:
|
||
|
|
type: file
|
||
|
|
description: CNV file containing p_values for each call
|
||
|
|
pattern: "*.p.value.txt"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@FriederikeHanssen"
|