nf-core_modules/software/quast/meta.yml

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name: quast
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description: Quality Assessment Tool for Genome Assemblies
keywords:
- quast
- assembly
- quality
tools:
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- quast:
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description: |
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QUAST calculates quality metrics for genome assemblies
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homepage: http://bioinf.spbau.ru/quast
doi:
input:
- consensus:
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type: file
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description: |
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Fasta file containing the assembly of interest
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- fasta:
type: file
description: |
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The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value.
- use_fasta:
type: boolean
description: Whether to use the provided fasta reference genome file
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- gff:
type: file
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description: The genome GFF file. Has to contain at least a non-empty string dummy value.
- use_gff:
type: boolean
description: Whether to use the provided gff reference annotation file
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output:
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- quast:
type: directory
description: Directory containing complete quast report
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pattern: "{prefix}.lineage_report.csv"
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- report:
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- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@kevinmenden"