nf-core_modules/tests/software/snpsites/test.yml

- name: snpsites
  command: nextflow run ./tests/software/snpsites -entry test_snpsites -c tests/config/nextflow.config
  tags:
    - snpsites
  files:
    - path: output/snpsites/filtered_alignment.fas
      md5sum: 34a3d2ae4439447eabe80282f4625dba
    - path: output/snpsites/constant.sites.txt
      md5sum: 8b9b226e3787f7baaefce07405af22c9
New Snpsites module (#416) * new gubbins module * new gubbins module * new gubbins module * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module * new snpsites module * new snpsites module * new snpsites module * new snpsites module * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * use sars-cov-2 alignment * remove old test alignment * new snpsites module * new snpsites module * new snpsites module * updated test file names * new snpsites module * revert to gubbins test on upstream * add new lines * renove whitespace * Apply suggestions from code review Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: avantonder <ajv37@cam.ac.uk> 2021-04-09 07:00:33 +00:00			`- name: snpsites`
			`command: nextflow run ./tests/software/snpsites -entry test_snpsites -c tests/config/nextflow.config`
			`tags:`
			`- snpsites`
			`files:`
			`- path: output/snpsites/filtered_alignment.fas`
			`md5sum: 34a3d2ae4439447eabe80282f4625dba`
			`- path: output/snpsites/constant.sites.txt`
			`md5sum: 8b9b226e3787f7baaefce07405af22c9`