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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
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name: "hmmer_hmmbuild"
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description: create an hmm profile from a multiple sequence alignment
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keywords:
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- search
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- hidden Markov model
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- HMM
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- hmmer
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- hmmsearch
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tools:
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- "hmmer":
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description: "Biosequence analysis using profile hidden Markov models"
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homepage: "http://hmmer.org"
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documentation: "http://hmmer.org/documentation.html"
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tool_dev_url: "https://github.com/EddyRivasLab/hmmer"
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doi: "10.1371/journal.pcbi.1002195"
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licence: "['BSD']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- alignment:
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type: file
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description: multiple sequence alignment in fasta, clustal, stockholm or phylip format
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pattern: "*"
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- mxfile:
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type: file
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description: read substitution score matrix, for use when building profiles from single sequences (--singlemx option)
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pattern: "*"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- hmm:
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type: file
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description: Gzipped HMM file
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pattern: "*.{hmm.gz}"
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authors:
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- "@erikrikarddaniel"
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