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28 lines
829 B
Text
28 lines
829 B
Text
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName:CONTROLFREEC_FREEC{
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ext.args = { [
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"sample":[
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inputformat: 'pileup',
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mateorientation: 'FR'
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],
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"general" :[
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bedgraphoutput: "TRUE",
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noisydata: "TRUE",
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minexpectedgc: "0",
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readcountthreshold: "1",
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sex: meta.sex,
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window: "10",
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],
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"control":[
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inputformat: "pileup",
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mateorientation: "FR"
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]
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]
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}
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}
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}
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