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34 lines
910 B
Text
34 lines
910 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RMARKDOWNNOTEBOOK } from '../../../modules/rmarkdownnotebook/main.nf' addParams(
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parametrize: false, options: [:]
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)
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include { RMARKDOWNNOTEBOOK as RMARKDOWNNOTEBOOK_PARAMETRIZE } from '../../../modules/rmarkdownnotebook/main.nf' addParams(
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options: [:]
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)
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workflow test_rmarkdown {
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input = [ [ id:'test_rmd' ], // meta map
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file(params.test_data['generic']['notebooks']['rmarkdown'], checkIfExists: true) ]
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RMARKDOWNNOTEBOOK ( input, [:], [])
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}
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workflow test_rmarkdown_parametrize {
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input = [ [ id:'test_rmd' ], // meta map
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file(params.test_data['generic']['notebooks']['rmarkdown'], checkIfExists: true) ]
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RMARKDOWNNOTEBOOK_PARAMETRIZE(
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input,
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[input_filename: "hello.txt", n_iter: 12],
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file(params.test_data['generic']['txt']['hello'], checkIfExists: true)
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)
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}
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