nf-core_modules/tests/modules/rsem/preparereference/test.yml

- name: rsem preparereference test_rsem_preparereference
  command: nextflow run tests/modules/rsem/preparereference -entry test_rsem_preparereference -c tests/config/nextflow.config
  tags:
    - rsem
    - rsem/preparereference
  files:
    - path: output/rsem/rsem/genome.chrlist
      md5sum: b190587cae0531f3cf25552d8aa674db
    - path: output/rsem/rsem/genome.fasta
      md5sum: f315020d899597c1b57e5fe9f60f4c3e
    - path: output/rsem/rsem/genome.grp
      md5sum: c2848a8b6d495956c11ec53efc1de67e
    - path: output/rsem/rsem/genome.idx.fa
      md5sum: 050c521a2719c2ae48267c1e65218f29
    - path: output/rsem/rsem/genome.n2g.idx.fa
      md5sum: 050c521a2719c2ae48267c1e65218f29
    - path: output/rsem/rsem/genome.seq
      md5sum: 94da0c6b88c33e63c9a052a11f4f57c1
    - path: output/rsem/rsem/genome.ti
      md5sum: c9e4ae8d4d13a504eec2acf1b8589a66
    - path: output/rsem/rsem/genome.transcripts.fa
      md5sum: 050c521a2719c2ae48267c1e65218f29
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`- name: rsem preparereference test_rsem_preparereference`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run tests/modules/rsem/preparereference -entry test_rsem_preparereference -c tests/config/nextflow.config`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`tags:`
			`- rsem`
			`- rsem/preparereference`
			`files:`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.chrlist`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: b190587cae0531f3cf25552d8aa674db`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.fasta`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: f315020d899597c1b57e5fe9f60f4c3e`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.grp`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: c2848a8b6d495956c11ec53efc1de67e`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.idx.fa`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: 050c521a2719c2ae48267c1e65218f29`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.n2g.idx.fa`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: 050c521a2719c2ae48267c1e65218f29`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.seq`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: 94da0c6b88c33e63c9a052a11f4f57c1`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.ti`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: c9e4ae8d4d13a504eec2acf1b8589a66`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 01:56:27 -04:00			`- path: output/rsem/rsem/genome.transcripts.fa`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 07:09:48 -04:00			`md5sum: 050c521a2719c2ae48267c1e65218f29`