nf-core_modules/tests/modules/sratools/prefetch/test.yml

- name: sratools prefetch test_sratools_prefetch
  command: nextflow run tests/modules/sratools/prefetch -entry test_sratools_prefetch -c tests/config/nextflow.config
  tags:
    - sratools/prefetch
    - sratools
  files:
    - path: output/sratools/ERR2815334/ERR2815334.sra
      md5sum: 9a98c7f6f4774b7ef94aa915b92a54ea
Add a module for sra-tools prefetch (#714) * chore: apply module template * refactor: add NCBI settings to options * docs: complete meta information * feat: add prefetch process * fix: correct bash commands * tests: define the right tests * style: move option definition to satisfy linting * fix: extract version correctly * fix: correct newline issues * refactor: address review comments * Apply suggestions from code review * chore: add retrying via nf-core label * refactor: validate download thoroughly * refactor: remove vdb-config input Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-10-11 17:30:41 -04:00			`- name: sratools prefetch test_sratools_prefetch`
			`command: nextflow run tests/modules/sratools/prefetch -entry test_sratools_prefetch -c tests/config/nextflow.config`
			`tags:`
			`- sratools/prefetch`
			`- sratools`
			`files:`
			`- path: output/sratools/ERR2815334/ERR2815334.sra`
			`md5sum: 9a98c7f6f4774b7ef94aa915b92a54ea`